Mohammed Iftekhar

Bioinformatics Practical Manual Mohammed Iftekhar

1. ACCESSING BIBLIOGRAPHIC DATABASE FROM NCBI 2. RETRIEVING PROTEIN / NUCLEOTIDE SEQUENCE INFORMATION FROM NCBI DATABASE 3. RESTRICTION MAPPING 4. SIMILARITY SEARCH USING FASTA TOOL FROM EMBL 5. SIMILARITY SEARCH USING BLAST TOOL FROM NCBI 6. PAIRWISE SEQUENCE ALIGNEMENT -EMBOSS SUITE 7. MULTIPLE SEQUENCE ALIGNMENT - CLUSTAL OMEGA 8. EVOLUTIONALRY RELATIONSHIP- PHYLOGENETIC ANALYSIS - TREE VIEW 9. PDB RETRIEVING 10. MOLECULAR VISUALIZATION-RASMOL 11. IDENTIFICATION OF GENE (HMGA2) IN HUMAN GENOME & Primer Designing 12. INTRODUCTION TO AUTODOCK 13. CALCULATION OF SD, VARIANCE, GRAPH PLOT - MS EXCEL 14. OPEN READING FRAME FROM - NCBI 15. RAMACHANDRAN PLOT